rs221586336 SNP Detail

Summary

• ID
  rs221586336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156039860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCTTCA CTAACGTGTC
  CTTAAGTATG TCTTGGGGCT GCACTCTTTG ATGAGTTCTC CAAGCTACCT TGTTTCTCCG
  GGGGGGGGGG GGAGGGGATT TGTTTTCCTA TCTGAGAGTA TCTTTGCTTT CAGTGTCCCT
  TTAAGGTTTG AGATGCGCCT CTTTTAGCAG GAAACAGACC ACCTTTGGGG CGCAGCAAGT
  R
  CTTCTGGCAC ACTTTTCTCC TGAATCCTTT CATTCCTAAA TGTGGTGCAC CCCCCACCCA
  CCCATTTTTC CCACAGCTTC CTTTTTTTTT TTCCTAGTTG AAAGCCATAT TTATTTGGCC
  TGTGCAAATT CCAGGAAGTT ATCCCTCTGC TTCCAATTTG TGGGACTTAG AGATCGAACT
  CAGATGGTCA TTCTTGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356231096	MGP_WTSI_2_156023676	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221586336					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356231096	MGP_WTSI_2_156023676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156039860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	643 bp distal
Gm75148	predicted gene, 75148	1223 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374122	regulatory region 374122	1369 bp upstream
Rr397432	regulatory region 397432	1181 bp downstream
Rr568209	regulatory region 568209	1288 bp distal
Rr568210	regulatory region 568210	747 bp distal
Rr568211	regulatory region 568211	1167 bp proximal
Rr568212	regulatory region 568212	1982 bp proximal
Tssr21145	transcription start site region 21145	1165 bp downstream
Tssr27045	transcription start site region 27045	1379 bp upstream