rs221587522 SNP Detail

Summary

• ID
  rs221587522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110242408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCATGTA ACCAGGGCAT
  GATGAGATGG GGTCAGACCC AGGGCACAGG ACTGTTATTC TCTGATGCTC TTCTCTAAAT
  CTAGGGGCTG GGCCATCTTT TCTGAGTGCG TAGGAAATAC CCCGGCTGGG AGACATAGAA
  GCCAGTGGCA AGACCCACCA ACCTGCATGG GTGTCTCCTG ACAGCCTTGG GAATGGGAGG
  Y
  AGAGACTATG CCTGCCACAC ACTGCACACC AACCCCACCC GGAGGCTAGG AGATGAAGGG
  GTTAGTGTCA GGCCCTCTAA GCACTCCTTC CCTGGCAGAC CACTACTACC CAAATCTTGG
  GAGTGGAAGA CTGGCCAAAG GCCAGTCCTC CTCAGTCATG CCAGGACCTT GGCCCTCCTC
  CTCCACCAAG TTGGTCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324157570	CHEV_12_111514184	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221587522					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110242408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	1304 bp proximal
Dio3os	deiodinase, iodothyronine type III, opposite strand	within coordinates
Rr472865	regulatory region 472865	244 bp proximal
Rr472866	regulatory region 472866	1191 bp proximal