rs221613128 SNP Detail

Summary

• ID
  rs221613128
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3121263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAGGGTA CGAGGAATAT ATTATTTTGT GTTATGATTT
  TCTCAAGGAC TTTCTGTACT TAGCCCATCT TCAAAGTCCG TATCTGTTTT CTAACCTCCA
  G
  GTGCCCTCTG CTAGAAATAC AAAATGAACA GATTCAAGAC AGCTCAAGTG ACAAGTTAAA
  CTTTTAAAGG TAACCTGCAC TCTGCTCACT GTGTGGCAC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546734	CHEV_11_3071266	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221613128					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3121263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1043 bp proximal
Rr441479	regulatory region 441479	1873 bp distal
Rr441480	regulatory region 441480	1051 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	within coordinates
Rr441483	regulatory region 441483	932 bp proximal
Rr441484	regulatory region 441484	1408 bp proximal
Rr441485	regulatory region 441485	1928 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1532 bp downstream