rs221616161 SNP Detail

Summary

• ID
  rs221616161
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69817255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACAGATACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACGAAT GCACGAGTGT
  CATTGCCTCT TTGTAGTGCC CGTTCTTGCT TTGTGACCAA TAACTACCAT TAGTGTCTGT
  TTTATTATTG TTTAATGATT TCTAACATTG GCACTTAGCA TCTTTTTTTT TCCAAATAAT
  M
  TTTGATAGTT GCTACTTTCC TTGTTCTTAT GGAAAAACAC GGGACGAAAA GCAGTGTACA
  GGAAGAAGGA TTTATTTTGG CTTGCGGTTT GAAGGGATCC AGTCCACAGT GGCAGGAGTA
  TGATATAGCT GACACCATGG CAGTCAGAAA GCAGAGAATG TCACAAAAGG GGTCTGGGCA
  ATAGAACCTC AAGTCCTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085548	CHEV_12_70871468	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221616161					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69817255 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	1174 bp upstream
Tssr116526	transcription start site region 116526	739 bp upstream