rs221616968 SNP Detail

Summary

• ID
  rs221616968
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156313552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCTGCTC AAGAGGTGCA ATTTCATATA
  AAGGGAGAGA GACCTGAACC CTCCCCCAGC TTCTCTTCAT TCTGGGCCAA CCCTTATCCA
  GAATGAAGTC AGGGTCCCCA AAGTTTAATC AAATGCAAGA AAGAGGCCAC GTGCCTCTCG
  S
  GTTCCTAAGG CTATCTTCCT CATTGGCCCC ACACTCCCAG ATCCCAGGAG CCTCAAGACT
  AGGATGACAG CCAGTCTCTG TTCCACTTGA ATGCAGAAGT GCCATTTTGC AGCCCCAGAC
  GTTAAGGTAG CGTTTGAGTC TGGCTGCACA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321446052	CHEV_4_155603204	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221616968					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156313552 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	240 bp downstream
Mir7658	microRNA 7658	964 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	553 bp upstream
Rr606703	regulatory region 606703	99 bp distal
Rr606704	regulatory region 606704	522 bp distal
Tssr45022	transcription start site region 45022	557 bp upstream
Tssr45023	transcription start site region 45023	525 bp upstream
Tssr45024	transcription start site region 45024	286 bp upstream