rs221620912 SNP Detail

Summary

• ID
  rs221620912
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33606006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTATCTT CTGCCTCCAG
  GAGACAGGTT GTTTTTTGTT TTTTCTTTTA ATCTTAGTCA AGCTTCTCGT AATTCCAGTT
  GGCAGTTGGA AGAGGAAGTA GTGAAAAGTC AAACAGCTTC CTGGGGGGAG CCCCTTTATG
  GAACTTCTAG AAAGTTCCAT TTAGAAGATA GATAACGCTA TGCAACTAAA CAGTGCATTA
  W
  ATTGTTCATG GTGTGATAAA AATAAAAAAA ATTAAAAAAT AAAAAGCAAC AATTGAGAGC
  TGTGGGACAA ATAGGTAAAA TTTACAGACC AAAGCCCTGA CCCTCTAGAA GGCCGAGGAA
  TTTGGGACCA TATAGGCAGT GAGTAAACCC CGTATGTGGA ACCAGGTATG GTAGATCACA
  CCTATAATAC ACACAACTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325139895	CHEV_16_33785722	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221620912					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33606006 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	61 bp downstream
Rr326609	regulatory region 326609	within coordinates
Tssr140846	transcription start site region 140846	1332 bp downstream
Tssr140847	transcription start site region 140847	1468 bp downstream
Tssr140848	transcription start site region 140848	1530 bp downstream