rs221629721 SNP Detail

Summary

• ID
  rs221629721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGGCCAC ACCCGCTCCC
  CGCCCTCCCC TACCTCCCGG GGTCCCAAAG AGACTAGGTC CAGCGTCTCA GACGGGGGCC
  CCCTAGCAAT GAATGAGAAG ATGGCAGATG TCTTCCCCAC CGACTAATGA CTCTGAAACT
  CAGGTCTGCG GCTGAAAGAG CATGTCCGCA ACCCAGACAC TAACCCCTTC CTTCCCCGCC
  W
  GCCACCTCGG ACGGGATGCT AGGGGACAGT TAAGACTGCA GGGACACAAG GGCGAAGCCT
  GGAGCAAGAG GAGACTACAA ATCCCAGCCA GCACCGCGGC GGACATGGGG GTGGGCGCTT
  CCTGTCTCGC AAGACTCGGA GGGTCGCCTT CCGGCGTGCC GCAGGAAATG ACGCTCGGGA
  CCCGGCCTCC TTCTACAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484725	CHEV_10_114821796	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221629721					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	within coordinates
Rr439213	regulatory region 439213	341 bp distal
Rr439214	regulatory region 439214	426 bp distal
Rr439215	regulatory region 439215	within coordinates
Rr439216	regulatory region 439216	219 bp proximal
Rr439217	regulatory region 439217	482 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	305 bp upstream
Tssr95813	transcription start site region 95813	790 bp downstream
Tssr95814	transcription start site region 95814	181 bp upstream
Tssr95815	transcription start site region 95815	211 bp upstream
Tssr95816	transcription start site region 95816	305 bp upstream
Tssr99330	transcription start site region 99330	404 bp upstream
Tssr99331	transcription start site region 99331	365 bp upstream
Tssr99332	transcription start site region 99332	305 bp upstream
Tssr99333	transcription start site region 99333	231 bp upstream
Tssr99334	transcription start site region 99334	178 bp upstream
Tssr99335	transcription start site region 99335	11 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	219 bp upstream