rs221632200 SNP Detail

Summary

• ID
  rs221632200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28855929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTTGGT CGCGCGCCAC
  GCGCACCCTT CAGGTAACTT GTCCAGTGTA AATTTTATAG CTTGAGGTTT GGATCTACGA
  GGTCGCAGGA GGCTCGGGTG TCCCTACTGT CCGACTCTCA AGAAAAAAAA AAAAAAAAAA
  AAGCAAAAAG CAACTTATTT AACTTTTATA CTTTTGGAGG CAGGGTCTCG ATTTATACAT
  W
  TATGTAGCTC AGGCTGGCTT CTTAGTCCTG CTTCCTCCTT CTGTTTGCTG GTTGACAGGC
  GTGTGACACG CCCAGCTGCC CTTTGTTCTT AGTGCACCCC AGACCGAAAG TCCCATCCGA
  CTTGTTTTTC TTCCACTTTA GGATTAGATT TTCAGCACGT CTTCACATCC ACTCTCCCAC
  CTCAGCCAGA CCCTCCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370876378	MGP_WTSI_7_29941523	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221632200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370876378	MGP_WTSI_7_29941523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28855929 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	within coordinates
Cpgi18740	CpG island 18740	within coordinates
Fam98c	family with sequence similarity 98, member C	276 bp upstream
Gm73440	predicted gene, 73440	within coordinates
Rr400219	regulatory region 400219	92 bp downstream
Rr644491	regulatory region 644491	436 bp distal
Rr644492	regulatory region 644492	781 bp distal
Rr644493	regulatory region 644493	within coordinates
Rr644494	regulatory region 644494	287 bp distal
Rr644495	regulatory region 644495	162 bp distal
Rr644496	regulatory region 644496	806 bp proximal
Tssr65599	transcription start site region 65599	836 bp downstream
Tssr65600	transcription start site region 65600	813 bp downstream
Tssr65601	transcription start site region 65601	750 bp downstream
Tssr71610	transcription start site region 71610	888 bp upstream
Tssr71611	transcription start site region 71611	873 bp upstream
Tssr71612	transcription start site region 71612	774 bp upstream
Tssr71613	transcription start site region 71613	548 bp upstream
Tssr71614	transcription start site region 71614	509 bp upstream
Tssr71615	transcription start site region 71615	294 bp upstream