rs221635580 SNP Detail

Summary

• ID
  rs221635580
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:169358378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT CCCTGTTGTT GAATTAGGGA
  A
  GGCTGAAAGA AGCTGAGGAG GACGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320102417	CHEV_1_171460940	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221635580					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:169358378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi989	CpG island 989	390 bp proximal
Gm34624	predicted gene, 34624	838 bp upstream
Nuf2	NUF2, NDC80 kinetochore complex component	Intron
Rr396525	regulatory region 396525	504 bp upstream
Rr422957	regulatory region 422957	within coordinates
Rr422958	regulatory region 422958	592 bp proximal
Rr422959	regulatory region 422959	877 bp proximal
Rr422960	regulatory region 422960	1510 bp proximal
Tssr14891	transcription start site region 14891	534 bp downstream
Tssr14892	transcription start site region 14892	638 bp downstream