rs221650039 SNP Detail

Summary

• ID
  rs221650039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5120844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGGGTG CCAACCTCAC
  CCAAAGTTCA TCATCCCCAC TGATGCCTGA GGGAAGGGTC TGGGAGGCCT CAGGGGGAAA
  GGGACCTTCC ATTTATCTAG GTGAGATAAG ACCCCTTTCA GAAAAGATAT GCTTCGTAAT
  TTTCAGTGAA ATGAGACAGG AGAGGGCAGG GCCTTACTTA CCCTCTGTTA CACAGCAGGC
  Y
  GAGTGGCCTG GAGGTTTGAT AAGGGAGAAA GTCCATACTT GTCCCCCACT TTATTAAAAT
  GCAACAAAAA TCTGGGGGAA GGTCTTGAGG TGAGGGTCTC TGATGAACTG GAGTCCAGCT
  GGAGTTTGGG AATCTCAGGT AGGATGGGGC TGGAGATTAG GGGAGAGAGG AGTCTCCAGC
  GGTCTGCTCT TCTGAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401649280	MGP_WTSI_19_5070816	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221650039					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401649280	MGP_WTSI_19_5070816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5120844 () rs orientation: forward

Symbol	Name	Function Class
Cd248	CD248 antigen, endosialin	176 bp downstream
Cpgi10428	CpG island 10428	1755 bp distal
Cpgi10429	CpG island 10429	711 bp proximal
Cpgi10430	CpG island 10430	1102 bp proximal
Gm46658	predicted gene, 46658	1410 bp upstream
Rr405800	regulatory region 405800	1181 bp upstream
Rr542921	regulatory region 542921	920 bp proximal
Rr542922	regulatory region 542922	1424 bp proximal
Tmem151a	transmembrane protein 151A	15 bp downstream
Tssr154384	transcription start site region 154384	1530 bp downstream
Tssr154385	transcription start site region 154385	1370 bp downstream
Tssr154386	transcription start site region 154386	1111 bp downstream
Tssr154387	transcription start site region 154387	1063 bp downstream
Tssr154388	transcription start site region 154388	981 bp downstream
Tssr157540	transcription start site region 157540	1258 bp downstream
Tssr157541	transcription start site region 157541	1293 bp downstream
Tssr157542	transcription start site region 157542	1681 bp downstream