rs221659147 SNP Detail

Summary

• ID
  rs221659147
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129202958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATTTCAGA AGACAATCTG GGGTTGTTGG
  GTAACTGGGA GGAGCTGATC TACAGGGAAA CCCCCTCCTT CTAATTCAGT TAAGGCTTCC
  CAAGAGCCAC TTAAGGATAC CACTAACCAA ATCACGAAGT CCTGTTCAGT GGTGAGTGTG
  T
  GCTTTCGACT TTGTGGGTTG AGGGTTATAT AGAAAGTTTC AATCTTGAGG CTTTCCTTTG
  ATGCTCTCCT GTTTTTAAAC CTCAGTGCCA TTTCTAACTA GGTCTTTGAA AACTTAACCT
  GGCAAGTTCC GTTGTCTTAG GGGCACAGGA                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319968995	CHEV_1_131171798	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221659147					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129202958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	1401 bp distal
Rr28456	regulatory region 28456	357 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8548	transcription start site region 8548	1751 bp downstream
Tssr8549	transcription start site region 8549	1739 bp downstream
Tssr8550	transcription start site region 8550	1723 bp downstream