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rs221671911 SNP Detail
Summary
  • ID
    rs221671911
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:103291339 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATGTGACTA TGTTCTTTCT
    TTTTTTTCTC TCAAGAATTC AATTAAATAT TTATTGAACA AATATATCAT AAATGAGCTG
    AGGGGCATTT TCATTTGAAG ATACAATAGA CAACTTCAAA TATTTGGCAG GCAGTCACAT
    AAAGAATGAA AAGATTTAAT CAGCGTGTCT ACTACAAAAA TCAAAGCTTA AACCACAGGG
    Y
    AAAGAGGAGC TGCAGACAGG CTGCAGGAGA GGTGGATAAA GCGCTCCATA CTGCTTAGCA
    TTGTCCTTTC CCACACAACA CATTTCATGA TTAATTCCTC CCTTCTTGAG ACAGCCCGGG
    GGTGGGGGGC CACTTCTCTC TGGATAGTGG GCAGGTGGAA CACATCGTAA GAACATTGTT
    AAATTCATGG TGACTGTTAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378745766 MGP_WTSI_9_103316470 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T C C T T T C T T C T C T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221671911 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T C C T T T C T T C T C T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss378745766 MGP_WTSI_9_103316470 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:103291339 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D9Mgc25 DNA segment, Chr 9, MRC UK Mouse Genome Centre 25 149 bp proximal
D9Mit242 DNA segment, Chr 9, Massachusetts Institute of Technology 242 624 bp distal
Gm47328 predicted gene, 47328 within coordinates
Gm69201 predicted gene, 69201 within coordinates
Rr198513 regulatory region 198513 1739 bp distal
Rr198514 regulatory region 198514 1339 bp distal
Rr207103 regulatory region 207103 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory