rs221672001 SNP Detail

Summary

• ID
  rs221672001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATCTCAG TTTGGAGACT GCAGAAGGAC
  TCTGCCCTGC AGGAAAATCT GCGCAAGGCA AGGCTTGCAA TGCCTCCTGC GACTCAGCGA
  CAGTGTTCGA TTGACGACTC GCCTCTGTTA TTAAGCCTGG AAGTGATTTA CTATCTGAGT
  Y
  CCCCCCCCCC CCAACAGTTC GAGCCTCTTG ATGTACTTTG TGTGCATGTG TTTCTGTCAC
  ATACGTGCCA CAGCGGAACA GATTTTGTTT TGACACTTTT GGTTCATGAT GTTATACTCT
  GAGTATTTTA CAATAATAGC CAATGTAAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323938309	CHEV_12_25782441	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221672001					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	815 bp distal
Cpgi4501	CpG island 4501	755 bp proximal
Gm59395	predicted gene, 59395	321 bp downstream
Gm59396	predicted gene, 59396	1641 bp downstream
Id2	inhibitor of DNA binding 2	1484 bp upstream
Rr403250	regulatory region 403250	1213 bp downstream
Tssr112979	transcription start site region 112979	1837 bp downstream
Tssr112980	transcription start site region 112980	1127 bp downstream
Tssr112981	transcription start site region 112981	1089 bp downstream
Tssr112982	transcription start site region 112982	137 bp downstream
Tssr112983	transcription start site region 112983	1421 bp upstream
Tssr115884	transcription start site region 115884	1783 bp upstream
Tssr115885	transcription start site region 115885	1480 bp upstream
Tssr115886	transcription start site region 115886	293 bp upstream