rs221679527 SNP Detail

Summary

• ID
  rs221679527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30353038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctttgagac aggggtccta ctgtgtagct
  gtagctggcc tgaaccttgt taggtagacc agcctgatct ggaatccaca gagatcctcc
  ACATCCACAC CGTTCTACAG GAGGGACTTG AGTGTTAACG ATGAAGTTTG CCCTTAGTGT
  R
  AAGTGGCAGA AAACACTGGT GGGGCTGCAG AATCAGCAGT GGGGGCCAAG TGAGTCTCAG
  TCAGACAGAA GTGATTGAgg attcagccac tcagaggtca ctggtgacct gaccaaggaa
  tcttagaata gtgggAGAAG GAGGTGAACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325130489	CHEV_16_30534306	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221679527					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30353038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8161	CpG island 8161	1896 bp distal
Gm60148	predicted gene, 60148	776 bp downstream
Rr514265	regulatory region 514265	1863 bp distal
Rr514267	regulatory region 514267	910 bp proximal
Rr514268	regulatory region 514268	1454 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	1846 bp upstream