rs221682441 SNP Detail

Summary

• ID
  rs221682441
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGTAGT TTTATTCATA
  AGCATGCCGC CAGCATTCAT TCAATGACGT TAGAAAAAAA GAGAGAAATA AAATAAAATA
  AAAAGGAGAA ACGGGAAGTA AACTAGTGTT TGTCATGCTC CAAATTCACT TCATGCTAGG
  TATACATGTA GCTCAGGCAG ACCGGATCTT TCTGCCACAG GAGCGCCACA CCCTTACCCC
  W
  GTTTCAAAGG TGCTGATTTT TTTTTTTTTT TGTAAATTTC TCTTTACATA TTTTTAACAT
  TATAAACTTG ATTTTAAAAA AAAGTTTGCA AAAAAAAAAA AGAAAGAAAA ACACATCAAA
  ATTAACCAAA CCCCAAAACA ATACAACTCA AATGAATACA TCTATGCAAT TAAAGTTGAC
  TTTTGGAAAC GAAATTGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646623	CHEV_14_60060565	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221682441					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679177 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	397 bp distal
Gm45935	predicted gene, 45935	848 bp upstream
Rr404137	regulatory region 404137	670 bp downstream
Rr493049	regulatory region 493049	864 bp distal
Rr493050	regulatory region 493050	737 bp distal
Rr493051	regulatory region 493051	within coordinates
Setdb2	SET domain, bifurcated 2	848 bp upstream
Tssr125903	transcription start site region 125903	1146 bp downstream
Tssr125904	transcription start site region 125904	732 bp downstream
Tssr129008	transcription start site region 129008	841 bp upstream
Tssr129009	transcription start site region 129009	631 bp upstream
Tssr129010	transcription start site region 129010	620 bp upstream
Tssr129011	transcription start site region 129011	421 bp upstream
Tssr129012	transcription start site region 129012	418 bp upstream
Tssr129013	transcription start site region 129013	411 bp upstream