rs221683205 SNP Detail

Summary

• ID
  rs221683205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:54445456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctggagtgt ctgatgacag tgacagtgtg
  tacttacata aaataaataa atctttttaa aaaaTTATTT agaaagaaag aaagagagag
  agagagagga aggaaggaag gaaggaagga aggaaggaag gaaggaagga aggaaggaag
  R
  gagagagaga gaaagaACAG TGAGGAGGTG GGACTTTACA GGCTGGGGGA GGGTTCTGCT
  GTTCCAGAGG ATGGAGATTG GTGAAGCTAT GTGGTAAAGG TACAGGGCTG GGCCTTATCT
  TTATTGGAAA CTTTGTTATT TTCTTCCTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322964812	CHEV_9_54385979	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221683205					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54445456 () rs orientation: forward

Symbol	Name	Function Class
Gm54935	predicted gene, 54935	770 bp downstream
Gm69041	predicted gene, 69041	within coordinates
Rr679145	regulatory region 679145	1196 bp distal
Rr679146	regulatory region 679146	611 bp distal
Rr679147	regulatory region 679147	141 bp distal
Sh2d7	SH2 domain containing 7	Intron
Tssr85160	transcription start site region 85160	812 bp upstream