rs221684628 SNP Detail

Summary

• ID
  rs221684628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91762264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCGCTC CGGCCTGTCC
  CGCTAAGGCC GCTAAGGCCC CTTTTGTCTC CAGAACCGGT CTGAGCCGGT CACATGGGCC
  CCCGCCCCTC CCCCCATCCC GTGGAAGGAC CCGCCCCCTC CCCCCAAACC CGCACCTCCC
  CAGACCCCCC TAGTCCCCGC CTCCACTCCC GCCCCTCGCC GAGCCGGGAC TCCCGCGTCT
  R
  TGCCTCTCAC CTCTGATCTC TGGGTCTCTG GTCCTGGAGT TCGGTTTTAC CAGTGCGCTT
  CTGGCTCAGG TCCCCTCGTA GCAGGCCCAG CTCTCTATCC CCTCCCCTTC CCCTGGTCTA
  GGCCTGTCTA TACTTTTCCC TCTCGCAGCC TGTCAGCTCT CAGGTCACCA CTTCGCTTGC
  CCACCGCGGG CCCCGGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821178	MGP_WTSI_2_91772076	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221684628					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821178	MGP_WTSI_2_91772076	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91762264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	within coordinates
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	within coordinates
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	45 bp proximal
Dgkz	diacylglycerol kinase zeta	905 bp downstream
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	Intron
Rr560809	regulatory region 560809	1692 bp distal
Rr560810	regulatory region 560810	within coordinates
Rr560811	regulatory region 560811	368 bp proximal
Tssr25213	transcription start site region 25213	981 bp upstream
Tssr25214	transcription start site region 25214	385 bp upstream
Tssr25215	transcription start site region 25215	249 bp upstream
Tssr25216	transcription start site region 25216	233 bp upstream
Tssr25217	transcription start site region 25217	196 bp upstream
Tssr25218	transcription start site region 25218	147 bp upstream
Tssr25219	transcription start site region 25219	126 bp upstream
Tssr25220	transcription start site region 25220	36 bp downstream
Tssr25221	transcription start site region 25221	75 bp downstream