rs221692660 SNP Detail

Summary

• ID
  rs221692660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119802801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGGGGC TGGAGGAAAT
  TGGCTTCCTC CAGGCGGCCA TTTGCCACGG CCACTGCCAA GTCCTCCTCT ACAGAGGCGT
  CATCGATGGC ATCCGCTGTG AGAGGCACGC CTGCCCCTGA CTCCGGAACT CCAGCCACTG
  AAAACTATAA GTACAGAAAG ACGGTGTGAG AGAGAGAGAG ATTTAGCTCT CCCAGAGAGT
  R
  GGGTGCTGTC TGTGGGGGAG GGGTACACAC TGTGCTCCAC AGCTACAAGG ATCTCTTACT
  CAAACCCCGA TGTACTGGCA GTGTCAGATC AGTCTAGCCG GCTGATCGGA TTCAGCTAGG
  AAGATTCAAG CATTATTTAT GCCCAGGGCC TAGCCTGTGG TCTGAAGCCG ACTACTTTCA
  TTTGGGAAAG GGCCATGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323223781	CHEV_9_119882853	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221692660					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119802801 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22487	CpG island 22487	384 bp proximal
Csrnp1	cysteine-serine-rich nuclear protein 1	Intron
Rr688590	regulatory region 688590	323 bp proximal
Rr688591	regulatory region 688591	1022 bp proximal
Rr688592	regulatory region 688592	1066 bp proximal