rs221694022 SNP Detail

Summary

• ID
  rs221694022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149324735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATATACAC AAAGGAGAAA ACAAAATCAT
  TGAACAACTT GAACAACACA GAAATCGTTT ATGTCttata tattaattta tttaatttat
  ttatgttttt gtttttgttt ttgttttgaa acagggttca tcagtgtagt actaaatatc
  Y
  tagagctcac aacatagacc aggctggtct ctaactcact gagatcttcc tgcctctctc
  tctcccaagt gccaggatta aaagcatgta tcaccacacc caaccatgca tttagttatt
  tTAAAAGTCA ATGTAAAAAA CTAGGTTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320039546	CHEV_1_151296117	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221694022					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149324735 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	within coordinates
Rr30991	regulatory region 30991	within coordinates
Tssr14116	transcription start site region 14116	955 bp downstream
Tssr14117	transcription start site region 14117	976 bp downstream