rs221715407 SNP Detail

Summary

• ID
  rs221715407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21573948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCAAGG CAATAACATG
  ATAGTGTCCA GGCAGGCATG GTGCAGGCAG AGCTGAGAGT TCTATATCTT CATCTCAAGG
  CTACTAGTGG AAGCTAGGGT GAGGGTCTTA TGCCCACACC CACAGTGACA CACCCACTCC
  AACAAGGCCA CACCTCTAAT AGTGCCACTC CCTGGGCCAA GCATATACAA ACCATGACAC
  Y
  CCCTTTATGT AGGAAGGGCA TGCACTAAGC ACCTTGTGCA GTGGGTACTC TTTTTACATG
  ACCAGATTAC GATACTACTC AGGGCAGGGC ACCTCACCAA GAGAGAAAAG AAAAAAAGCC
  GTTTTACTGT AGTGGTTCGA ATGAGAACAC AGACATCAGG TATTTGAACC CCTGGTACCC
  AGTTGGTGGC AATGGTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325752832	CHEV_19_21671074	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221715407					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21573948 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	729 bp downstream
Gm38486	predicted gene, 38486	382 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr364167	regulatory region 364167	1454 bp proximal