rs221722998 SNP Detail

Summary

• ID
  rs221722998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40965521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCTTG CAAACACACC
  GTGTGCGAAT CCGTAGGCCG CTCCATCAGC TGCCTCCTGT TGATGGGTCT TCCAGTGGGG
  TTAAGCGCTT GCTTCCCTAG TTTGTGTCCC TGGTGCCCCA CCGCTGTTCA GCTCCTCTCT
  TGACTTGGCT CATCTCCACT GACAAACGGA GTCATCTCTC TTTAATCTGT ATACAGCACC
  Y
  CTAGCTCACA CGCTAATTTT CCTTTTGATC TACCTGATTG TAGCATTGCC TTCGAATTGT
  TAACATGCTA AGAGACAGTT GGAAAGATAA TTCCCAACAG TTTTATGAAC TGAAAATTTA
  AACTGTTGCA ACGTCAAAGA AAAGGGAAGC CAGTGTTTTT AGTTAACTCT GTCCTGGTGA
  CAATCCTTTT GAGTCTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374393559	MGP_WTSI_8_41597834	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221722998					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374393559	MGP_WTSI_8_41597834	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40965521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				Noncoding-Transcript-Variant
Cpgi20281	CpG island 20281			within coordinates
Rr662586	regulatory region 662586			1187 bp distal
Rr662587	regulatory region 662587			602 bp distal
Tssr2553	transcription start site region 2553			1251 bp upstream
Tssr2554	transcription start site region 2554			992 bp downstream
Tssr76955	transcription start site region 76955			1036 bp downstream
Tssr76956	transcription start site region 76956			693 bp downstream
Tssr76957	transcription start site region 76957			618 bp downstream
Tssr81046	transcription start site region 81046			2000 bp upstream
Tssr81047	transcription start site region 81047			1206 bp upstream
Tssr81048	transcription start site region 81048			1183 bp upstream
Tssr81049	transcription start site region 81049			1134 bp upstream
Tssr81050	transcription start site region 81050			724 bp upstream
Vps37a	vacuolar protein sorting 37A			Intron
				Noncoding-Transcript-Variant