rs221724770 SNP Detail

Summary

• ID
  rs221724770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162397029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGCAAGGA AGTTCGGCAT AGTAAGCAAA
  TATACGGATA AAATCATCAA CTGAAggggc tggagagacg gctcagtgag aaaaggcact
  tatccttctt gttaacgacc caggttcaat tcctagcacc cacatggcag cttgcaacag
  Y
  ctgtaactcc agtcccaggg gatttgaagt cctcatctga tctttaagag catcaggcat
  acacatagta gtgtatgcac atatatgcat gcagccaaaa acacccatac acataataaa
  TCTTTTAAAA ACATTAAATA AATAGAAACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082938	CHEV_1_164499591	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221724770					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162397029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	802 bp proximal
Rr396472	regulatory region 396472	944 bp upstream
Rr396473	regulatory region 396473	1682 bp upstream
Rr421988	regulatory region 421988	565 bp proximal
Rr421989	regulatory region 421989	1056 bp proximal
Rr421990	regulatory region 421990	1134 bp proximal
Rr421991	regulatory region 421991	1777 bp proximal
Tssr9715	transcription start site region 9715	1137 bp upstream
Tssr9716	transcription start site region 9716	1207 bp upstream
Tssr9717	transcription start site region 9717	1227 bp upstream
Tssr14622	transcription start site region 14622	822 bp downstream
Tssr14623	transcription start site region 14623	1889 bp downstream
Tssr14624	transcription start site region 14624	1908 bp downstream
Tssr14625	transcription start site region 14625	1935 bp downstream
Tssr14626	transcription start site region 14626	1973 bp downstream
Vamp4	vesicle-associated membrane protein 4	1055 bp upstream