rs221725060 SNP Detail

Summary

• ID
  rs221725060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116355551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGTCCC CAGAGCTCTG
  GTTTTCCCGA ATAAAGCCTC CTGTGGTTTG CATCAAGTTT GGTCTCTCAT GAGTTCTTGG
  GGGTCCACTA TTATCCCGAG ACTTGAGTGA GGGACTCCCT TCGGAGGTCT TTCAGTTTTA
  CCTCTTATAT TTTATCTGTG TACAGATGTG TACAGATTTT TAAAAGCTAA GAGTATAATT
  S
  TCTTTTTTGG TGTGAGAGGT TTCAAGACAC TGTTTCTCTG TGTAGCTTTG GCTGTCCTAG
  AACTAGCTCT GTAGACCAGG CTGGTCTCAA ACTCAAAGAG ATCTGCCTGT GTCTGCTTCC
  CTGGAGTGCC GGAATTAAAA GTGTGTTCCA CTACCACCTG GCTGTATGTA TAATTCTTAA
  GAACATGGAA TTAGGTCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359355972	MGP_WTSI_3_116264820	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221725060					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359355972	MGP_WTSI_3_116264820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116355551 () rs orientation: forward

Symbol	Name	Function Class
Gm9761	predicted gene 9761	476 bp upstream
Gm65478	predicted gene, 65478	within coordinates
Lrrc39	leucine rich repeat containing 39	1071 bp upstream
Rr583740	regulatory region 583740	586 bp proximal
Rr583741	regulatory region 583741	1087 bp proximal
Rr583742	regulatory region 583742	1502 bp proximal
Tssr31355	transcription start site region 31355	1041 bp upstream
Tssr31356	transcription start site region 31356	1063 bp upstream
Tssr31357	transcription start site region 31357	1106 bp upstream
Tssr31358	transcription start site region 31358	1149 bp upstream
Tssr31359	transcription start site region 31359	1162 bp upstream
Tssr35315	transcription start site region 35315	359 bp upstream