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rs221727012 SNP Detail
Summary
  • ID
    rs221727012
  • Variation Type
    SNP
  • Alleles
    C/G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431247 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACAGGAAGG AGATGAAGGC
AGGACAGAAG GGCCAGAAAC CACAGAGCAA GAGGTGATGG TACTCGCTTG TGTTCCCAGA
AGTTGAGAAG CTGCGGCATA AGAATTGCAG AGCCTTCGAA GCCAGCTTGA GTTACAGAAT
GGGATCCTGT CTCAAGAAGC CAAAAGCCAA TCGACCAAGC AAGTAATAAA TGTCTGTTCC
B
CCCAGCATCC AGAAGGCTAA AGAAGGCAGG AGGATTCAAG GCCAACCTGG GCTACACACT
AATTGAGAAA GGAAACAAGA AGGGGCTGGG GACCCAGATA GGAGGCAACC CTGGATCAGC
TGGTGCCTGC CGAGGGTGAA AGAGCTGGAC ACTCACGTCA GTTCTTGTGT GACTTGGGAG
CTCTGCAGCT CTTCCTGGAC                                            

B = C/G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754801 MGP_WTSI_7_20282671 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T G T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221727012 SNP T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T G T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754801 MGP_WTSI_7_20282671 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431247 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 244 bp distal
Cpgi18508 CpG island 18508 1077 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 449 bp proximal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 647 bp distal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 861 bp downstream
Tssr2113 transcription start site region 2113 831 bp downstream
Tssr2114 transcription start site region 2114 705 bp downstream
Tssr2115 transcription start site region 2115 677 bp downstream
Tssr2116 transcription start site region 2116 607 bp downstream
Tssr2117 transcription start site region 2117 553 bp downstream
Tssr2118 transcription start site region 2118 458 bp downstream
Tssr2119 transcription start site region 2119 481 bp upstream
Tssr2120 transcription start site region 2120 408 bp downstream
Tssr2121 transcription start site region 2121 382 bp downstream
Tssr2122 transcription start site region 2122 333 bp downstream
Tssr64880 transcription start site region 64880 1048 bp downstream
Tssr64881 transcription start site region 64881 985 bp downstream
Tssr64882 transcription start site region 64882 926 bp downstream
Tssr64883 transcription start site region 64883 909 bp downstream
Tssr64884 transcription start site region 64884 881 bp downstream
Tssr64885 transcription start site region 64885 803 bp downstream
Tssr64886 transcription start site region 64886 768 bp downstream
Tssr64887 transcription start site region 64887 750 bp downstream
Tssr64888 transcription start site region 64888 532 bp downstream
Tssr64889 transcription start site region 64889 425 bp downstream
Tssr64890 transcription start site region 64890 391 bp downstream
Tssr64891 transcription start site region 64891 363 bp downstream
Tssr64892 transcription start site region 64892 332 bp downstream
Tssr64893 transcription start site region 64893 238 bp downstream
Tssr64894 transcription start site region 64894 143 bp upstream
Tssr64895 transcription start site region 64895 239 bp upstream
Tssr64896 transcription start site region 64896 265 bp upstream
Tssr70973 transcription start site region 70973 993 bp upstream
Tssr70974 transcription start site region 70974 960 bp upstream
Tssr70975 transcription start site region 70975 935 bp upstream
Tssr70976 transcription start site region 70976 883 bp upstream
Tssr70977 transcription start site region 70977 862 bp upstream
Tssr70978 transcription start site region 70978 839 bp upstream
Tssr70979 transcription start site region 70979 831 bp upstream
Tssr70980 transcription start site region 70980 817 bp upstream
Tssr70981 transcription start site region 70981 793 bp upstream
Tssr70982 transcription start site region 70982 764 bp upstream
Tssr70983 transcription start site region 70983 743 bp upstream
Tssr70984 transcription start site region 70984 683 bp upstream
Tssr70985 transcription start site region 70985 648 bp upstream
Tssr70986 transcription start site region 70986 619 bp upstream
Tssr70987 transcription start site region 70987 574 bp upstream
Tssr70988 transcription start site region 70988 555 bp upstream
Tssr70989 transcription start site region 70989 517 bp upstream
Tssr70990 transcription start site region 70990 498 bp upstream
Tssr70991 transcription start site region 70991 468 bp upstream
Tssr70992 transcription start site region 70992 456 bp upstream
Tssr70993 transcription start site region 70993 427 bp upstream
Tssr70994 transcription start site region 70994 412 bp upstream
Tssr70995 transcription start site region 70995 379 bp upstream
Tssr70996 transcription start site region 70996 353 bp upstream
Tssr70997 transcription start site region 70997 287 bp upstream
Tssr70998 transcription start site region 70998 267 bp upstream
Tssr70999 transcription start site region 70999 211 bp upstream
Tssr71000 transcription start site region 71000 182 bp downstream
Tssr71001 transcription start site region 71001 212 bp downstream
Tssr71002 transcription start site region 71002 272 bp downstream
Tssr71003 transcription start site region 71003 290 bp downstream
Tssr71004 transcription start site region 71004 318 bp downstream
Tssr71005 transcription start site region 71005 669 bp downstream
Tssr71006 transcription start site region 71006 702 bp downstream
Tssr71007 transcription start site region 71007 760 bp downstream
Tssr71008 transcription start site region 71008 866 bp downstream
Tssr71009 transcription start site region 71009 884 bp downstream
Tssr71010 transcription start site region 71010 1028 bp downstream
Tssr71011 transcription start site region 71011 1061 bp downstream
Tssr71012 transcription start site region 71012 1097 bp downstream
Tssr71013 transcription start site region 71013 1723 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory