rs221733793 SNP Detail

Summary

• ID
  rs221733793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAATTGCTA CCTTTGGAAA AAAAAAAAAA
  CAAACAACAA AAACAAacca caaacaatag caagaaatac atttgagagt atggctgtgt
  acacacgtaa cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
  Y
  gtagatgaag aaactcccac acacaatgct tacctgatgc ttgtttttca cactggtgtt
  gtctcttcta tttcatttct tttaagaaca ggatcaatta aattgatttc tgtcccacag
  gtaggtcAAT TTGGAAACTA TCCAGCCCCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324138818	CHEV_12_102125857	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221733793					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853906 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	424 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	31 bp proximal
Rr471363	regulatory region 471363	252 bp proximal
Tssr114718	transcription start site region 114718	1766 bp downstream
Tssr117330	transcription start site region 117330	189 bp downstream
Tssr117331	transcription start site region 117331	223 bp downstream
Tssr117332	transcription start site region 117332	243 bp downstream
Tssr117333	transcription start site region 117333	278 bp downstream
Tssr117334	transcription start site region 117334	304 bp downstream
Tssr117335	transcription start site region 117335	379 bp downstream
Tssr117336	transcription start site region 117336	426 bp downstream