rs221737623 SNP Detail

Summary

• ID
  rs221737623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62764551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTAGTAT TTTTCTGTAT
  TGCAACAACC CTCCTAATGA CAGAAACAGA CCCACCTCTG GGAGTTGGTG CAATAGTAGG
  ACCGGCCGCA TTAGCCAGAA CCCAGCTGCC AGCTGACCTG CCCTCTGCAA CCTTGACCAA
  GGACTCCCTC TGCCCAGCAA TGTCAGCTCA CCCAAGAAGA GGGGAACAAC AGCCCACAGA
  Y
  TCTTCTCCTC CTCTTTCCAA GGTTAAAGAG CAGTTGGGAC AACAGTTATT TTTGGCTGTT
  TGTTTTTAAA TATTCGATGT TGCAATCGCA AACGTTCTCC GTGCAAGCGA GCTTCACTGT
  GGCTGTCTTT CTTAACAATG TGTTTTATCT CCTGATTGAG AAAATCACTT GAGATTTTAT
  CCTACATGAT CCCCCTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349851955	MGP_WTSI_1_62771966	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221737623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349851955	MGP_WTSI_1_62771966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62764551 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Tssr6998	transcription start site region 6998	404 bp upstream
Tssr6999	transcription start site region 6999	623 bp upstream
Tssr7000	transcription start site region 7000	919 bp upstream
Tssr7001	transcription start site region 7001	1005 bp upstream
Tssr7002	transcription start site region 7002	1086 bp upstream
Tssr7003	transcription start site region 7003	1118 bp upstream
Tssr7004	transcription start site region 7004	1273 bp upstream
Tssr7005	transcription start site region 7005	1333 bp upstream
Tssr7006	transcription start site region 7006	1461 bp upstream
Tssr7007	transcription start site region 7007	1558 bp upstream
Tssr7008	transcription start site region 7008	1581 bp upstream
Tssr7009	transcription start site region 7009	1630 bp upstream
Tssr7010	transcription start site region 7010	1729 bp upstream
Tssr7011	transcription start site region 7011	1773 bp upstream