rs221740783 SNP Detail

Summary

• ID
  rs221740783
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79705206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAGAA GAAAAAAGAA
  AAGGAAAATG TCGTCACATG TGCTGGCACA CATCTGTAAC CCCAGCACTC AGGAGGCAGA
  GGTAGGCAGG AGGAATCTGT GAGTTTGAGG CTCACCTGGT CTACAGAGCA AGTTCCAGGA
  CAGCCAGGAC TACACAGAGG AACCCTGTCT GCGGGGGTGG GGGTGGGAGG GTTGGGAGGT
  K
  GGGTGGGGGA AAACAACCTA GAAAGAAAAG AAAAAAGGAA AGGAACATAT CTGGTCTCAG
  TTGGTAGATT GCTTGTCTAG CGCACAGGGA GCCTTGAGTG CATCCTTAGG ACATGACACC
  TGTAATCCCA CCATAGGGGA TGAGGGGATG GTGGGAGTGG AGGGAGGAGG GATTCAAGGC
  TGTGTGAGAC CCTCTCTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss372037566	MGP_WTSI_7_87200344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	T	T	T	G	T	T	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs221740783					SNP	G	T	G	G	T	T	T	G	T	T	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372037566	MGP_WTSI_7_87200344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79705206 () rs orientation: forward

Symbol	Name	Function Class
Rr649768	regulatory region 649768	1965 bp distal
Rr649770	regulatory region 649770	291 bp proximal
Tssr73200	transcription start site region 73200	724 bp downstream
Zfp710	zinc finger protein 710	Intron