rs221742669 SNP Detail

Summary

• ID
  rs221742669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110008375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAAAGACTG AAGAAAAGGC CATCCAGAGA CTGCCCCACC TAGGGATCCA
  TCCCTTCTGC AGACATCATA CCCCTTCCTG ATGCCAAGAA GTGCTTGCTG ATTAGAACCT
  GGCATGGCTG TTCCCTGAGA GATTCTACCA GCACCTGACC AATACAGATG GAGATACTCA
  Y
  AGCCAACCAA TGAGTACTGA GCCCAGGAAC CCCAATGAAA GAGCTAGGGG AAGGACTGAA
  AGAGCTGAAG AGGATTGCAA CCCCATAAGA AGAACAGTAT CAACTAACTG GAACACCCAG
  AGATCCCAGG GACTAAACCA CCAACCGAAG ATTATACATG GAGGAAGCCA GGACTCCAGA
  TATATGTGTA GCAGAGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255175	CHEV_4_109823783	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221742669					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110008375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	1341 bp proximal
Gm33070	predicted gene, 33070	1491 bp upstream
Rr84118	regulatory region 84118	1026 bp proximal
Tssr38368	transcription start site region 38368	1475 bp upstream