rs221745056 SNP Detail

Summary

• ID
  rs221745056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215629 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTGATGCAGT CAGGCCACCG
  CTGAGGTGGG CCCAGCGTCC CCATGATCCC AGCCAGTGAT GTCAGCTGAT GCCATCAACA
  GAACTCGCCG CCCTCTTTCC CCGGGGAACG CGCGGGGAAA TGAAGCTGTT ACTGGAAATG
  TGCCTGTCCT TTGAGCGTCT GATGCTGAAG GTTACACATC CAGGCCATTC GTCTCTCTCC
  S
  GACGCTTAAA CACCACATTG GCTTAGGTCT GCTTAGTCGC CATCGGCATT ATCAAAACAC
  GAAGATTTCT CTCGTACTAG CAAAGAAAGG GCCTGTCTGT TTTCTTCCTC CACTTGATTA
  AATACTCATT GTATTAACAT GGCAGCCAAT AAGTCTTAAA TTGAAATTTT GTTAGATTAC
  CCGTCACTAA GCATTAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379317847	MGP_WTSI_10_6080912	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221745056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379317847	MGP_WTSI_10_6080912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215629 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	751 bp upstream
Cpgi1267	CpG island 1267	673 bp proximal
Cpgi1268	CpG island 1268	within coordinates
Gm67397	predicted gene, 67397	within coordinates
Gm67407	predicted gene, 67407	within coordinates
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	261 bp proximal
Rr426945	regulatory region 426945	1167 bp proximal
Tssr3113	transcription start site region 3113	488 bp upstream
Tssr3114	transcription start site region 3114	901 bp upstream
Tssr92240	transcription start site region 92240	694 bp upstream
Tssr92241	transcription start site region 92241	724 bp upstream