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rs221747385 SNP Detail
Summary
  • ID
    rs221747385
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr9:7355463 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TATTATCCTT TTGGGGTGAC
    TGTTATACCC TTTCTGTTTG TCCTCATAGA TGAGAAGTAC TGGTTAATAA ACAACTTAGT
    ACCAGAGCCA CACTATCCCA GGAGCATATA TTCCCTGGGC TTCTCTGCAT CTGTGAAGAA
    GGTTGATGCA GCTGTCTTTG ACCCACTTCG CCAAAAGGTT TATTTCTTTG TGGATAAACA
    M
    TACTGGAGGT AAGGTTCATT GGCTGGTACT TTTTTTTGCT AAGATTTGTA AGACAGGCAC
    AGAATGGAAT TTTTCAGAAG GCAGTCTTTC TATAAAAGCT TCAGACACCT TTGTCTTTAT
    GGGAGAGGCA GAAGGGGAAT ATAGTTCTGA AATAGTCACT ATCAACCTGC TTCTTTTCTT
    TGGGCCTTTG GATTGGTTTC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss376560375 MGP_WTSI_9_7355463 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221747385 SNP C C C C C C C C C C C C C C C C C C C A C C A C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss376560375 MGP_WTSI_9_7355463 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:7355463 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Mmp12 matrix metallopeptidase 12 within coordinates
Tssr2759 transcription start site region 2759 1917 bp downstream
Tssr83722 transcription start site region 83722 1933 bp downstream
Tssr83723 transcription start site region 83723 1886 bp downstream
Tssr83724 transcription start site region 83724 1567 bp downstream
Tssr83725 transcription start site region 83725 1430 bp downstream
Tssr83726 transcription start site region 83726 1335 bp downstream
Tssr83727 transcription start site region 83727 665 bp downstream
Tssr83728 transcription start site region 83728 640 bp downstream
Tssr83729 transcription start site region 83729 631 bp downstream
Tssr83730 transcription start site region 83730 149 bp downstream
Tssr83731 transcription start site region 83731 105 bp downstream
Tssr83732 transcription start site region 83732 72 bp downstream
Tssr83733 transcription start site region 83733 24 bp downstream
Tssr83734 transcription start site region 83734 361 bp upstream
Tssr83735 transcription start site region 83735 383 bp upstream
Tssr88069 transcription start site region 88069 1958 bp upstream
Tssr88070 transcription start site region 88070 685 bp upstream
Tssr88071 transcription start site region 88071 37 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory