rs221751645 SNP Detail

Summary

• ID
  rs221751645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCCAG ACCCTTGAGC
  TCTAACTTCA GGCTGATTGT CCCCCAGGAG CTGAGAATAG GTGAGAAATA GGAAAGGGGG
  CTTCTTTTGA GAAAGATGAG CTTTTAACAC AAGCCAGCCT CATTGGAAAT GAAATAATGT
  CTTCCTGTAC CGCCCTTGTA AAAGGCTCAG TCAGATCCTA CCTGTGTTAG TCTGTTGTAT
  Y
  ATCTCAGGCC AATTGAGCAA CTCTGTGTCC AAAGACAAGG GGGCAGAAGA CAGAAATGAC
  AACTTCGCTT ACACACACAC ATACACACAT ACCCCGTGAG CTTGACTGTC CCTGGATGGA
  GCACTCAGAA ACTCAGGGAT TCTGGACTAG GAGCAAACAA ATTTATGTTG TTATTCTAGC
  TCTTGGCTTT CCTAGCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530202	MGP_WTSI_5_123441831	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221751645					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530202	MGP_WTSI_5_123441831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129885 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	347 bp downstream
Rr620035	regulatory region 620035	1881 bp distal
Rr620036	regulatory region 620036	1006 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48737	transcription start site region 48737	1879 bp downstream
Tssr48738	transcription start site region 48738	1053 bp downstream
Tssr48739	transcription start site region 48739	1042 bp downstream
Tssr48740	transcription start site region 48740	997 bp downstream
Tssr48741	transcription start site region 48741	958 bp downstream
Tssr53175	transcription start site region 53175	1532 bp upstream
Tssr53176	transcription start site region 53176	1415 bp upstream
Tssr53177	transcription start site region 53177	1359 bp upstream
Tssr53178	transcription start site region 53178	1327 bp upstream
Tssr53179	transcription start site region 53179	1293 bp upstream
Tssr53180	transcription start site region 53180	1249 bp upstream