rs221758880 SNP Detail

Summary

• ID
  rs221758880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28449452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAGGA GCTCAGCCTT
  GCCTCACAAG GGCCTTCCTC TTCCTCCCTA CGTGCCTCCC ACCCAGGAGC ACCACTCACA
  CTCCTGCTTT TTCACGGGCA ACTTGTAGGC CAGTGTCAAG GCCCGGGGAT CTGTGATCTT
  CAGACACGCA GCCATCTTGC CAGTATCCTC TGTGGGGCAT CCTACCTTCT TAGCAATCTA
  R
  GGAAAGGCAG AGGCAGGAGG TTAGAGAAGG CCAGCATCGA GGTTTGGAAT GACTAAGGGC
  AAACAGAAGG TCCAGGGCAG CACGGGATTG GGAAAGGTCC CCTCCCTGCC TACTCCTGCC
  CTGCTGTGCT CACCGTTTTG GCCCAGAAAA GTGGGTTCTT CTGGATGGCC CAGGGGCTCA
  GTGCCATACC ACTCTGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478951	MGP_WTSI_2_28414960	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221758880					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478951	MGP_WTSI_2_28414960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28449452 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	1326 bp proximal
Tssr16958	transcription start site region 16958	1813 bp downstream
Tssr16959	transcription start site region 16959	1643 bp downstream
Tssr16960	transcription start site region 16960	1508 bp downstream
Tssr16961	transcription start site region 16961	1423 bp downstream
Tssr16962	transcription start site region 16962	1387 bp downstream
Tssr16963	transcription start site region 16963	1114 bp upstream
Tssr16964	transcription start site region 16964	1508 bp upstream
Tssr23253	transcription start site region 23253	1751 bp upstream
Tssr23254	transcription start site region 23254	1664 bp upstream
Tssr23255	transcription start site region 23255	1618 bp upstream
Tssr23256	transcription start site region 23256	1448 bp upstream
Tssr23257	transcription start site region 23257	1418 bp upstream
Tssr23258	transcription start site region 23258	1386 bp upstream
Tssr23259	transcription start site region 23259	1368 bp upstream
Tssr23260	transcription start site region 23260	1358 bp upstream
Tssr23261	transcription start site region 23261	1317 bp upstream
Tssr23262	transcription start site region 23262	45 bp upstream
Tssr23263	transcription start site region 23263	3 bp upstream
Tssr23264	transcription start site region 23264	162 bp downstream
Tssr23265	transcription start site region 23265	233 bp downstream
Tssr23266	transcription start site region 23266	413 bp downstream
Tssr23267	transcription start site region 23267	439 bp downstream
Tssr23268	transcription start site region 23268	1081 bp downstream
Tssr23269	transcription start site region 23269	1147 bp downstream
Tssr23270	transcription start site region 23270	1218 bp downstream
Tssr23271	transcription start site region 23271	1740 bp downstream
Tssr23272	transcription start site region 23272	1764 bp downstream
Tssr23273	transcription start site region 23273	1794 bp downstream
Tssr23274	transcription start site region 23274	1824 bp downstream
Tssr23275	transcription start site region 23275	1888 bp downstream