rs221763060 SNP Detail

Summary

• ID
  rs221763060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45227988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCACAT AGATAAATTC
  AGTAACAGCT GGAACATCTC AGGGATGAGG GAAAAGGTTG CTTGGGGAAC TGAGGCAGGG
  CCAGGATAGA AACATGGGTG TTGCTCAGTT AGAGGCAGCA TTGACAGTGA GATCTGAAAT
  AAATGCTGAG CTGCTAAAGC CTAATGTGGA TGCACAGCCA AAGTTGAAGC CTTCTGGTCC
  Y
  TCATAAAGAA CTATAGAAGG GGGGTTTGGG AAAGGACAGC ATGGAGAGTG TCTAGTCAGA
  GATCTGAAGC AGTAGAAATA GCTCTTCTCT GTTTCTCATG GATGTTTCTG ATTGGTGCCA
  TCTATTCATC CTCAAGGGGA AAGATCAGAA CCCCGTCACC AAGGGACTTC CCTTCTCAGC
  TGTGCTCTGC TCCCCATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390953930	MGP_WTSI_14_45610206	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	C	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221763060					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	C	T	C	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390953930	MGP_WTSI_14_45610206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45227988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	679 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	645 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491041	regulatory region 491041	201 bp distal
Tssr4380	transcription start site region 4380	1719 bp upstream
Tssr125202	transcription start site region 125202	1920 bp downstream
Tssr125203	transcription start site region 125203	1859 bp downstream
Tssr125204	transcription start site region 125204	1612 bp downstream
Tssr128221	transcription start site region 128221	852 bp upstream
Tssr128222	transcription start site region 128222	661 bp upstream
Tssr128223	transcription start site region 128223	605 bp upstream