rs221765554 SNP Detail

Summary

• ID
  rs221765554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA ACCAAAAAAA AAAAAAAAAT
  W
  AAAAAAATAA ATAAATAAAT TACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ
ss366325780	MGP_WTSI_5_114579972	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ
rs221765554					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325780	MGP_WTSI_5_114579972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268024 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1745 bp upstream
Cpgi16309	CpG island 16309	1565 bp distal
Cpgi16310	CpG island 16310	229 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1216 bp downstream
Rr617827	regulatory region 617827	1420 bp distal
Rr617828	regulatory region 617828	1688 bp distal
Rr617829	regulatory region 617829	44 bp proximal
Rr617830	regulatory region 617830	741 bp proximal
Rr617831	regulatory region 617831	1540 bp proximal
Tssr48056	transcription start site region 48056	401 bp upstream
Tssr48057	transcription start site region 48057	425 bp upstream
Tssr48058	transcription start site region 48058	1194 bp upstream
Tssr48059	transcription start site region 48059	1221 bp upstream
Tssr52694	transcription start site region 52694	1744 bp upstream
Tssr52695	transcription start site region 52695	742 bp downstream
Tssr52696	transcription start site region 52696	1623 bp downstream
Ung	uracil DNA glycosylase	423 bp upstream