rs221768591 SNP Detail

Summary

• ID
  rs221768591
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69814585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAGGGAA ATGAGCCCAG GCTGAGTAGC
  CCAGCTCACC ACAGTGTCTC TGCTGTACCA TACAGCAGGA GCAACCACAC TAGCAAGGTC
  TCATTGAGCA CTACTTGCAA GCTGCCAAAG GAGCAAAGAG CAGCACAGGA AACGCTCTCT
  K
  GTTGCAATGC ATAATTCCTC TGTGTTGATG ACTTTCTGGA GGGTGGTGCC TACCTTCTGG
  AACATGAAAA GCATGCTTCA TGGACATTAA CAAGCCACAA GCCACTGTAA TCTCATTTAC
  AGGAGGTCAT GGCGGATCTT AGGTAACCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085522	CHEV_12_70868798	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221768591					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69814585 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467131	regulatory region 467131	1851 bp distal
Rr467132	regulatory region 467132	1142 bp distal
Rr467133	regulatory region 467133	20 bp distal
Tssr116524	transcription start site region 116524	519 bp upstream
Tssr116525	transcription start site region 116525	1492 bp downstream
Tssr116526	transcription start site region 116526	1922 bp downstream