rs221771740 SNP Detail

Summary

• ID
  rs221771740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTAG CTCTCCAGAC
  CCCAAGGAGG GAGGCCAGCG TGGGAAGTGA ATCAGTTTGA CTCTCAAGAG GCCCAACTGT
  CCCCATCTTG GGAGCCGGGA GAGACCGGTC ACCGGTGTCC TAAAGGCCAG CCAACACAAG
  AAAGAAGGCT ATTGAGGGCT CATCCAACCC AGTACTGCCT GCCACAGCAA CTGATAAGGA
  Y
  TCCCCAGGTG ACAGGGAGGA CGGGAGCACA CCTGGACACC CAGAGGGGGC AGATTCAGGG
  GTAGGACTCA GTCAGCCAAG ACCTTGCTGT GGACTCAGAT GGGTGAGGCT TGGGGGGCGG
  TTCCTTATGG TGTCCCGGAA TTGAAGAGTC AAGGTGGTTC CTGCCTCTTA TCCATCCTCA
  GTCCTTCCCC CTTCGGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390200	MGP_WTSI_12_113912901	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221771740					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390200	MGP_WTSI_12_113912901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			within coordinates
Rr369631	regulatory region 369631			740 bp upstream
Rr473552	regulatory region 473552			1761 bp distal
Rr473553	regulatory region 473553			425 bp distal
Rr473554	regulatory region 473554			269 bp distal
Rr473555	regulatory region 473555			290 bp distal
Rr473556	regulatory region 473556			within coordinates
Rr473557	regulatory region 473557			292 bp proximal
Rr473558	regulatory region 473558			757 bp proximal
Rr473559	regulatory region 473559			948 bp proximal
Rr473560	regulatory region 473560			1194 bp proximal
Tssr115391	transcription start site region 115391			267 bp downstream
Tssr117877	transcription start site region 117877			663 bp upstream
Tssr117878	transcription start site region 117878			604 bp upstream
Tssr117879	transcription start site region 117879			415 bp upstream
Tssr117880	transcription start site region 117880			323 bp upstream
Tssr117881	transcription start site region 117881			305 bp upstream
Tssr117882	transcription start site region 117882			63 bp downstream
Tssr117883	transcription start site region 117883			84 bp downstream
Tssr117884	transcription start site region 117884			136 bp downstream