rs221774423 SNP Detail

Summary

• ID
  rs221774423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91054004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCCGT GCTTAAGTTT
  GTTTTATATA TCTCAATATT TTATTCTTCC ATCGTATTGA AGGTGTCAGG AATGCTTAAG
  AAACCATGTT TCCTGCAGCA ACAGCTACTA GCTGGAGTCT CCCTTGTTTT TGTCAAGAAG
  GCACACTTGA TGCCTTTCAA AGTCTCTGCA GGATTTTTCT GTCAGAGAAT CCCTCTCTAA
  Y
  ATATTCTTTC CCCCAAGGAA CAGCTTGAGG TTCATTGCTA ATCTGAGGAA TTTTTAAAAA
  GTGTTTTTAA AGCTTTCATT TAAATTATTT TTCCTAAACT TTTTATTTAT TTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTATAAACAG GTCTTGCTTT CCCTCCTACT
  GAGGTTGATT CGGAACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847553	MGP_WTSI_5_91335171	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221774423					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847553	MGP_WTSI_5_91335171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91054004 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	207 bp downstream
Tssr47229	transcription start site region 47229	1987 bp downstream
Tssr47230	transcription start site region 47230	1962 bp downstream
Tssr47231	transcription start site region 47231	1932 bp downstream
Tssr47232	transcription start site region 47232	1785 bp downstream
Tssr47233	transcription start site region 47233	1735 bp downstream
Tssr47234	transcription start site region 47234	1700 bp downstream
Tssr47235	transcription start site region 47235	942 bp downstream
Tssr47236	transcription start site region 47236	903 bp downstream
Tssr47237	transcription start site region 47237	883 bp downstream
Tssr47238	transcription start site region 47238	824 bp downstream
Tssr47239	transcription start site region 47239	819 bp downstream
Tssr47240	transcription start site region 47240	800 bp downstream
Tssr47241	transcription start site region 47241	771 bp downstream
Tssr47242	transcription start site region 47242	746 bp downstream
Tssr47243	transcription start site region 47243	728 bp downstream
Tssr47244	transcription start site region 47244	689 bp downstream
Tssr47245	transcription start site region 47245	672 bp downstream
Tssr47246	transcription start site region 47246	618 bp downstream
Tssr47247	transcription start site region 47247	564 bp downstream
Tssr47248	transcription start site region 47248	505 bp downstream
Tssr47249	transcription start site region 47249	444 bp downstream
Tssr47250	transcription start site region 47250	306 bp downstream
Tssr47251	transcription start site region 47251	241 bp downstream
Tssr47252	transcription start site region 47252	189 bp downstream
Tssr51812	transcription start site region 51812	1918 bp upstream
Tssr51813	transcription start site region 51813	1901 bp upstream
Tssr51814	transcription start site region 51814	927 bp upstream
Tssr51815	transcription start site region 51815	881 bp upstream
Tssr51816	transcription start site region 51816	848 bp upstream