rs221780120 SNP Detail

Summary

• ID
  rs221780120
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43211327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCTGG TCCCCATGAA
  AAGCCTCAGT GTCACATTTA TTTCAGACCT TCATCTTTAA AGATTCCACA TGGCTTCAAT
  TCCCATTTCC CAACAAACCT AGTTTTTTTT TTCTTTATAT TTATTAATTT ATTTTTTATT
  TACTTCTTAG TTTAGAGGAA AAAAATCTTT TAAGTCCCTG AGAATATACA GAAAAAAAAA
  W
  GGTATTTTTA GTAATATGCA GCATCCCGGT CTCTTGGAAA TAACTGATAT ACACGTATAG
  GTAGGAAGTA AAATCCCCTG AAAATATGAG ACAGCCTTGG ACTTTCACTG TGTCACAGTC
  CACAAGCTTT GCCTGCTTAT GTGCACACTG TGATGGTGGT CCCTGTATCA TTGTATTGTG
  GGAGTGGCCA TGACAGCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371134946	MGP_WTSI_7_50817273	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221780120					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371134946	MGP_WTSI_7_50817273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43211327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	221 bp proximal
Gm44818	predicted gene 44818	227 bp downstream
Rr645990	regulatory region 645990	within coordinates
Rr645991	regulatory region 645991	364 bp proximal
Tssr66014	transcription start site region 66014	356 bp upstream
Tssr66015	transcription start site region 66015	388 bp upstream
Tssr66016	transcription start site region 66016	425 bp upstream
Zfp175	zinc finger protein 175	353 bp upstream