rs221786116 SNP Detail

Summary

• ID
  rs221786116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85274201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCCAG CCTGGTCTAC
  AAACCAAGTC CAGGACAGCC AGGGCTATTG CAGAAAAACC TGAGCAGAAA TTTCAGCACA
  TTGAGATAAC AGAGCATGGG TATTATAATC ATAACTTTTT GGCTTATTAG TAGTATTCTT
  CAATGTTGGC CACAAAACCC ACAGCAAACT CATACATAGG TGCAGGAAGG GCTGCTTCAT
  Y
  GTCATCTCTG GCTCAAGATA CTTTAGATAC TACAGTTCAT ATTGATCTTT GATTTGATGG
  ATCTTATGTA AAGCTTTGTG TAACTTCTTA ATATTAGCAA ACCTCATATA GAACACTCAG
  TACATACTGA ACCAAAAAGT ATATGTGGTC ATCATGTCCT TGAGCAAAGT CACTATTCTG
  TGTCAATAAC TGGCAGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389310313	MGP_WTSI_13_85265687	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221786116					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389310313	MGP_WTSI_13_85265687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85274201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	617 bp proximal
Gm4076	predicted gene 4076	468 bp downstream
Rr388812	regulatory region 388812	931 bp upstream
Rr483357	regulatory region 483357	431 bp proximal
Tssr4134	transcription start site region 4134	766 bp upstream
Tssr120547	transcription start site region 120547	482 bp upstream
Tssr120548	transcription start site region 120548	608 bp upstream
Tssr120549	transcription start site region 120549	653 bp upstream
Tssr123349	transcription start site region 123349	548 bp downstream
Tssr123350	transcription start site region 123350	904 bp downstream
Tssr123351	transcription start site region 123351	1005 bp downstream
Tssr123352	transcription start site region 123352	1311 bp downstream