rs221791819 SNP Detail

Summary

• ID
  rs221791819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108145090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGTCGCG TGTGGACCTC
  GGCCAGGGGC GCGTGGGAAG AAACCTGACC TATTTTCTAC GCCCGCCTTT GCGAGCGGGC
  AGTGGAGGAC AAGGCGCGGG GGCCGGGCTC CCCGTGGGCA ACAGAGAGCT GCAGAGGGGC
  CTCGGCCCCA AGCCGCGTGC GCCTGCCACC GGAGGAAGGA AACCAAGGCT GCAGCCCGCC
  R
  CACGCAGTCC CAGCGCCCCG CGCGCACTCC GGGCCCCGGC CGTACCCGAG GGCGGCGCCC
  AGGCCGCGCC CAGGCCGCGC CCTGAACCTG CCGCCTGCCC CCGTCCCGGT GGAAGAGGGA
  AGCTGCAGAC GCTCGCCAGT CCCCTCAGGG ACCGGGCCTG CCGGGCCTCG GAGCCCACAG
  CCTCCCAGGC CCTGAGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387282941	MGP_WTSI_12_109417041	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221791819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387282941	MGP_WTSI_12_109417041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108145090 () rs orientation: forward

Symbol	Name	Function Class
Ccnk	cyclin K	748 bp upstream
Cpgi5076	CpG island 5076	within coordinates
Rr403488	regulatory region 403488	498 bp upstream
Setd3	SET domain containing 3	within coordinates
Tssr114948	transcription start site region 114948	334 bp downstream
Tssr114949	transcription start site region 114949	20 bp upstream
Tssr114950	transcription start site region 114950	302 bp upstream
Tssr114951	transcription start site region 114951	305 bp upstream
Tssr114952	transcription start site region 114952	712 bp upstream
Tssr114953	transcription start site region 114953	962 bp upstream
Tssr114954	transcription start site region 114954	1077 bp upstream
Tssr117676	transcription start site region 117676	379 bp downstream
Tssr117677	transcription start site region 117677	406 bp downstream