About   Help   FAQ
rs221792691 SNP Detail
Summary
  • ID
    rs221792691
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:123259614 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGTGAGGTG GATAGGAGCA
GGTTGTAGTG AGGAGAGTAA GGATGGGTTC ATTAAAAGTG AATTATATAA ATGCACAAAA
TTTTCAAACA AAAATAATTT TAAAAAGAGA AGTCAAATGT GTGGTTGTAA GATATATTTG
TATTTAAAAT AAGGTTATCA ATTTCAAAAT CAGATTGTGA GAAAGTCTAA TAGAAGTGCT
Y
GTAATGAGTG CTAATATGTC AAATTAATTT ATTTAGTTTA ATTTTCCTAC TCAAGGATAC
ATGTTTATTA CAATGTGTGA CTGCTGCTGA AGGTTCCTTT AGGGCTTTGT CTGGAAGAAA
CATGGTCTAT ATTGACAGAA TATCATGCAA TAAATGCAGT CCTGAGACAG AAAAATGTGA
ACATGAATTT TTAAATAATT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922377 MGP_WTSI_6_123232673 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221792691 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922377 MGP_WTSI_6_123232673 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123259614 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e mRNA-UTR
Tssr58808 transcription start site region 58808 75 bp upstream
Tssr58809 transcription start site region 58809 737 bp upstream
Tssr58810 transcription start site region 58810 763 bp upstream
Tssr58811 transcription start site region 58811 799 bp upstream
Tssr63019 transcription start site region 63019 1083 bp upstream
Tssr63020 transcription start site region 63020 151 bp upstream
Tssr63021 transcription start site region 63021 73 bp upstream
Tssr63022 transcription start site region 63022 34 bp upstream
Tssr63023 transcription start site region 63023 within coordinates
Tssr63024 transcription start site region 63024 90 bp downstream
Tssr63025 transcription start site region 63025 143 bp downstream
Tssr63026 transcription start site region 63026 154 bp downstream
Tssr63027 transcription start site region 63027 203 bp downstream
Tssr63028 transcription start site region 63028 216 bp downstream
Tssr63029 transcription start site region 63029 247 bp downstream
Tssr63030 transcription start site region 63030 277 bp downstream
Tssr63031 transcription start site region 63031 334 bp downstream
Tssr63032 transcription start site region 63032 358 bp downstream
Tssr63033 transcription start site region 63033 383 bp downstream
Tssr63034 transcription start site region 63034 402 bp downstream
Tssr63035 transcription start site region 63035 423 bp downstream
Tssr63036 transcription start site region 63036 477 bp downstream
Tssr63037 transcription start site region 63037 507 bp downstream
Tssr63038 transcription start site region 63038 544 bp downstream
Tssr63039 transcription start site region 63039 603 bp downstream
Tssr63040 transcription start site region 63040 661 bp downstream
Tssr63041 transcription start site region 63041 710 bp downstream
Tssr63042 transcription start site region 63042 735 bp downstream
Tssr63043 transcription start site region 63043 745 bp downstream
Tssr63044 transcription start site region 63044 767 bp downstream
Tssr63045 transcription start site region 63045 858 bp downstream
Tssr63046 transcription start site region 63046 877 bp downstream
Tssr63047 transcription start site region 63047 900 bp downstream
Tssr63048 transcription start site region 63048 928 bp downstream
Tssr63049 transcription start site region 63049 943 bp downstream
Tssr63050 transcription start site region 63050 967 bp downstream
Tssr63051 transcription start site region 63051 1019 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory