rs221800948 SNP Detail

Summary

• ID
  rs221800948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90905338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT AACCTGGGAT GCGTGCATGC
  R
  TGCGTGCGTG CGTGCGTGCG TGCGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321608227	CHEV_5_91186505	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221800948					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90905338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	1864 bp proximal
Cxcl5	C-X-C motif chemokine ligand 5	1881 bp upstream
Gm72413	predicted gene, 72413	944 bp downstream
Rr614399	regulatory region 614399	709 bp proximal
Rr614400	regulatory region 614400	1472 bp proximal
Tssr47178	transcription start site region 47178	1870 bp upstream