rs221814298 SNP Detail

Summary

• ID
  rs221814298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:48723935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCTTCC CTGAAAGACA
  GGTCAGTGAA TTCTACCTTA GAATCTTGTC TGAAAACCAC CCCATTCTTC ATGGCCAGGT
  ATCCCACACC TTCCCTTAAC ATACCCCAAG AAGCTGTGGT ATGTTAACAG TATTATGTTT
  TAGATGTGTA TGAACACCCT CGTTGTCAGC TGAACTTTAC AGTAGAGGGT ACTATTTCCA
  R
  GACTCTTGCC TACTAACCTG CCCTGTGACT CTTAGTACCT GGACATAAAG GAACAGGGGA
  GGGGCAGATG GGTGGAGCAG ATGCGAGTGA AAATGTTTGT TTTGGTTTTA GTTGTGTGAG
  GAAATACACT GGTGCCACTG GAGACTTGTG GAGATCAGAG GACAGCTTTC TGAAGTCATT
  TCTACCCTTC TGCTTGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368228472	MGP_WTSI_6_48697000	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221814298					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368228472	MGP_WTSI_6_48697000	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48723935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gimap5	GTPase, IMAP family member 5			Intron
				Noncoding-Transcript-Variant
Gm28053	predicted gene, 28053			Intron
Rr368069	regulatory region 368069			842 bp downstream
Rr399641	regulatory region 399641			206 bp downstream
Rr399642	regulatory region 399642			648 bp upstream
Rr629754	regulatory region 629754			794 bp distal
Rr629755	regulatory region 629755			within coordinates
Rr629756	regulatory region 629756			328 bp distal
Rr629757	regulatory region 629757			5 bp distal
Tssr1832	transcription start site region 1832			662 bp downstream
Tssr56207	transcription start site region 56207			821 bp downstream
Tssr56208	transcription start site region 56208			789 bp downstream
Tssr56209	transcription start site region 56209			767 bp downstream
Tssr56210	transcription start site region 56210			699 bp downstream
Tssr56211	transcription start site region 56211			283 bp downstream
Tssr56212	transcription start site region 56212			923 bp upstream
Tssr60779	transcription start site region 60779			897 bp upstream
Tssr60780	transcription start site region 60780			500 bp downstream
Tssr60781	transcription start site region 60781			534 bp downstream
Tssr60782	transcription start site region 60782			740 bp downstream