rs221820015 SNP Detail

Summary

• ID
  rs221820015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148489221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTAGCA GCTCCAGGAC
  CCGCCGCGCC AGGTGGACAG AGCCGAGTGA CACACGGACA TGGAGCGGGG TGGGAGGGGG
  TTAAATGCGC CGTCCTCTTT CCCCGGCCCA GGCGGTGATT CACACGCGCT CGCGACTCAG
  GTCCTCATTA AAGCCCCGGC GACGAAGTGT ACAGATAACT ATGTGGCTAC ACATCGAGCG
  Y
  CGAGCTGAAA GCGGCCGGGG CCGCCGAGAA GCTCAGCGCG CGCCGCGGGG CCGCACAGCC
  GGGCTGCGCG CAGCCGCGCT CAAGGGCATC GACCTCGCCA GCCGCCGAGC CGAGCCGAGC
  CGAACTGGGC CGAGCCGAAC CGAGCGCAGC GCCGGGGGGG CTCAGGCCGC GGGCGCCTCA
  GCGCAGCCGC GCCGGTCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367131320	MGP_WTSI_5_149363987	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221820015					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367131320	MGP_WTSI_5_149363987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148489221 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	806 bp downstream
Cpgi17075	CpG island 17075	786 bp distal
Cpgi17076	CpG island 17076	within coordinates
Gm72666	predicted gene, 72666	1430 bp upstream
Gm72684	predicted gene, 72684	760 bp downstream
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	within coordinates
Rr625195	regulatory region 625195	241 bp proximal
Rr625196	regulatory region 625196	385 bp proximal
Rr625197	regulatory region 625197	940 bp proximal
Rr625198	regulatory region 625198	1504 bp proximal
Rr625199	regulatory region 625199	1783 bp proximal
Tssr49862	transcription start site region 49862	18 bp downstream
Tssr54570	transcription start site region 54570	730 bp upstream
Tssr54571	transcription start site region 54571	288 bp upstream
Tssr54572	transcription start site region 54572	190 bp upstream
Tssr54573	transcription start site region 54573	138 bp upstream
Tssr54574	transcription start site region 54574	within coordinates
Tssr54575	transcription start site region 54575	24 bp downstream
Tssr54576	transcription start site region 54576	206 bp downstream
Tssr54577	transcription start site region 54577	372 bp downstream
Tssr54578	transcription start site region 54578	1445 bp downstream
Tssr54579	transcription start site region 54579	1582 bp downstream
Ubl3	ubiquitin-like 3	within coordinates