rs221820708 SNP Detail

Summary

• ID
  rs221820708
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110227681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAATGAA GCTGGTTTCC
  ATCACCCTGA TGTTATTGGG TTCACTCGCT TTCCTAGGCG CGGACACTGC AGGGCCAGAT
  ACTCCTTCGC AGTTCCGAAA GAAGTGAGTT TGGGCCGTGC TTTCTTTCTT CACTTTGAAT
  ACCTGGCAAT GAGAGAAAAC TGAGAGATGG TCTGGAGGTG TTACAAAGGG AGTGGAGCTG
  K
  CTGGGACATC ACTTGAACTT AGGCCAAACG CATCTGCTTG TGTTTTCTAG GTGGAATAAG
  TGGGCGCTAA GTCGTGGGAA GAGGGAACTA CAAGCATCCA GCAGCTACCC TACGGGACTC
  GCTGATGAGA CGACAGTTCC TACCCAGACT CTTGATCCAT TCCTGGACGA GCAGAACACA
  ACTGGCCCCC TACAAGCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322397531	CHEV_7_117771988	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221820708					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110227681 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	within coordinates
Cpgi19575	CpG island 19575	1861 bp distal
Cpgi19576	CpG island 19576	684 bp distal
Cpgi19577	CpG island 19577	within coordinates
Cpgi19578	CpG island 19578	1831 bp proximal
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	within coordinates
Rr400547	regulatory region 400547	1733 bp upstream
Rr653266	regulatory region 653266	1668 bp distal
Rr653267	regulatory region 653267	1567 bp distal
Rr653268	regulatory region 653268	907 bp distal
Rr653269	regulatory region 653269	1238 bp distal
Rr653270	regulatory region 653270	803 bp distal
Rr653271	regulatory region 653271	1171 bp proximal
Rr653272	regulatory region 653272	1738 bp proximal
Rr653273	regulatory region 653273	1871 bp proximal
Tssr68500	transcription start site region 68500	808 bp downstream
Tssr68501	transcription start site region 68501	60 bp upstream
Tssr68502	transcription start site region 68502	1052 bp upstream