rs221826398 SNP Detail

Summary

• ID
  rs221826398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:29410889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACTACC ATAAAACAAC
  CTAGGGGGAG GGGCAGCCAA GGTTCCCGGA GCCAGGCGGG AATTTGGGAT GATCCCAGTC
  TCCTTGCCTG CCATTATCAA ACAACCCAAA GGCAGGGAGA CCCAACTGCC TGGGGCTCTA
  GGCCTCCGTC GGAGCCTCAA AGGAAAGCAC AAATCCCTAC AGCGAATCTA GGAAAGAAAG
  R
  AAGATTTCCA GATCCTGATT TACAGGGGGG GGGGGGGGGG GGGGGGGGCA GACTAGCACC
  GGGTGCACCG ACTCCAGTAC TGGTTTGTGT ACTGGAGTAG AAGAGCCAGT GCCCCGAGTT
  GCTATCTCCT GTGGGAGGCA TAGGGTGTAG GTTGAAAAGA CTGTTTCCTC CAGCAGCTGG
  GTCTGGGCAG GCAAAACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379871013	MGP_WTSI_10_29254699	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221826398					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379871013	MGP_WTSI_10_29254699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29410889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1415	CpG island 1415	1160 bp distal
Cpgi1416	CpG island 1416	120 bp distal
Cpgi1417	CpG island 1417	529 bp proximal
Gm48159	predicted gene, 48159	within coordinates
Rr429491	regulatory region 429491	1667 bp distal
Rr429492	regulatory region 429492	1912 bp distal
Rr429493	regulatory region 429493	1738 bp distal
Rr429494	regulatory region 429494	166 bp distal
Rr429495	regulatory region 429495	within coordinates
Rr429496	regulatory region 429496	964 bp proximal
Rspo3	R-spondin 3	Intron
Tssr92878	transcription start site region 92878	228 bp upstream
Tssr97164	transcription start site region 97164	894 bp downstream
Tssr97165	transcription start site region 97165	914 bp downstream
Tssr97166	transcription start site region 97166	964 bp downstream