rs221827627 SNP Detail

Summary

• ID
  rs221827627
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44056645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC AGCGAAAGGG TTGAGTTGAC
  G
  GCTGAGAGAG GGGCTTGTTT ATCAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325817154	CHEV_19_44142696	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221827627					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44056645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	821 bp proximal
Erlin1	ER lipid raft associated 1	within coordinates
Gm59010	predicted gene, 59010	1654 bp upstream
Rr548150	regulatory region 548150	1310 bp proximal
Rr548151	regulatory region 548151	1665 bp proximal
Tssr159429	transcription start site region 159429	1154 bp downstream
Tssr159430	transcription start site region 159430	1440 bp downstream
Tssr159431	transcription start site region 159431	1484 bp downstream
Tssr159432	transcription start site region 159432	1530 bp downstream