rs221842965 SNP Detail

Summary

• ID
  rs221842965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124568145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGTAA CTGAGACAAG
  ACTTCCCAAA ATGCCATACC AGAGGGCCTG GGGAGAGAAG GCAAAGCAGT TCCTTACTGG
  AGTCAGGAGC CGCGGGAGCG ATGTTTCCTT TGGCCTGGCC TTCTAGGGGA GGCAGGCAGA
  AGTATGTACA ACCAGGACTG CCTCTTCTGG GCTCCAGAGT CTCAGACTTG GGCTTTGGAA
  R
  GCTAAGGCTC TGGTCCAGGC TTTGCATATT CTAAGCCAGA GCTCTACCAC CGAGTGATCC
  CCCAGGCCAC AGACCTAAGC ACACAGCCTC TATGCCTTTC CTTGTTACAA CTGCACACGG
  TTGTTCCCGC ATCCATTCTC TACAGGCCCA GAAGCCAGTG GGGACTGTGC CAGCAAGGAG
  GCCCCATGAC CTGGCTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294402	CHEV_4_124351596	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221842965					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124568145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14773	CpG island 14773	1908 bp distal
Rr599321	regulatory region 599321	765 bp distal
Rr599322	regulatory region 599322	26 bp proximal
Rr599323	regulatory region 599323	878 bp proximal