rs221850122 SNP Detail

Summary

• ID
  rs221850122
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:103830375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTGCAT GTAAGCAAAG
  TCAATATTTA CTGAGCCATC TGCTTTCAGA TGCCTGGGGC TGAAGATTCA CTGCCTCCAC
  CAGGGGCTCA GAGTAGGTTA TGTGCCCACC TGACAAATGG AGACACAGGA CCAAAACAAA
  GAGATTGCTC CTTGCAAGTG TAGATATGAA TTCTTTGTTT CCTGTGCAGG AGAATGGACT
  S
  TGACTGACAG GAAATTCCTG ACAGGCTGGT GCACAGTGGC CAGGGGGACA GGCTAGGGGG
  CAGAGAGTAG CTCTGTAAGG AAGAGCTGGG CTGCCCTTAG ATCAATTGAC CTCTCTGAAC
  CAGAGACATT TCCAAAATGG CAGATTGGTA CCCATCATGG TTGCTAAGGG TACAGGAAGC
  TTGAGTAAAA CATGCACATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	SM/J	SPRET/EiJ
ss387170255	MGP_WTSI_12_105102326	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	SM/J	SPRET/EiJ
rs221850122					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387170255	MGP_WTSI_12_105102326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:103830375 () rs orientation: forward

Symbol	Name	Function Class
Rr471835	regulatory region 471835	576 bp distal
Rr471836	regulatory region 471836	71 bp distal
Serpina1a	serine (or cysteine) peptidase inhibitor, clade A, member 1A	554 bp upstream
Tssr117529	transcription start site region 117529	817 bp upstream
Tssr117530	transcription start site region 117530	486 bp upstream
Tssr117531	transcription start site region 117531	1556 bp downstream
Tssr117532	transcription start site region 117532	1610 bp downstream
Tssr117533	transcription start site region 117533	1642 bp downstream
Tssr117534	transcription start site region 117534	1658 bp downstream