rs221853797 SNP Detail

Summary

• ID
  rs221853797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111506424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCTTTA GGTTGAGGGC
  AAAGGAAATG GAATCAAGAC AGTTATAGTC AACATGGTTG ACGTTGCAAA GGCGCTTAAT
  CGGCCTCCAA CGTGTAAGTA AAGCTTGGAG AAGCCTGAAA AGGTATATTA TGGCTATAGT
  TTTTACAGTC TTTGAGCTAT ACATCTTTCC TCAATCATGT TAATTAGCAA GTTGGAACTG
  Y
  GGACCTACTT GATTGGGTGT CATTAAGCCA CCCTGGCTGT ATTTCAGTTT CCCTGTAATT
  TTAACACGGT GAGTTTTTGT ATATTCACGT GCAACCAGTG CTTTAGTTAA CTATAATGGA
  ATGTCTTGTC TTTATACAGA TCCCACCAAA TATTTTGGTT GTGAGCTGGG AGCACAGACC
  CAGTTTGATG TTAAGAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360293	MGP_WTSI_12_112778201	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221853797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360293	MGP_WTSI_12_112778201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111506424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	619 bp distal
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	1755 bp upstream
Gm58608	predicted gene, 58608	303 bp downstream
Gm60631	predicted gene, 60631	1356 bp upstream
Rr403512	regulatory region 403512	1862 bp downstream
Rr473213	regulatory region 473213	1198 bp distal
Rr473214	regulatory region 473214	1238 bp distal
Rr473215	regulatory region 473215	536 bp distal
Snora28	small nucleolar RNA, H/ACA box 28	956 bp upstream
Tssr115320	transcription start site region 115320	1747 bp downstream
Tssr115321	transcription start site region 115321	1712 bp downstream
Tssr115322	transcription start site region 115322	1615 bp downstream
Tssr115323	transcription start site region 115323	1508 bp downstream
Tssr115324	transcription start site region 115324	1186 bp downstream
Tssr115325	transcription start site region 115325	1116 bp downstream
Tssr115326	transcription start site region 115326	543 bp downstream
Tssr115327	transcription start site region 115327	223 bp upstream
Tssr117829	transcription start site region 117829	1384 bp upstream